|
|
| H5mdFrameDataSetBuilder (gmx) | nbnxn_excl_t (gmx) | SimulationInputHandle |
| H5mdTestBase (gmx::test) | nbnxn_im_ei_t (gmx) | SimulationInstabilityError (gmx) |
| AbstractAnalysisArrayData (gmx) | DataFileFinder (gmx) | HaloExchange (gmx) | nbnxn_sci_t (gmx) | SimulationParticle |
| AbstractAnalysisData (gmx) | DataFileInfo (gmx) | HaloMpiRequests (gmx) | NbnxnPairlistCpu (gmx) | SimulationSignal (gmx) |
| AbstractAverageHistogram (gmx) | DataFileOptions (gmx) |
| NNPotTopologyPreprocessor (gmx) | SimulationSignaller (gmx) |
| AbstractOption (gmx) | DeviceFloat4 | NonbondedBenchmarkInfo (gmx) | SimulatorConfig (gmx) |
| AbstractOptionSection (gmx) | df_history_t | IAnalysisDataModule (gmx) | NormalDistribution (gmx) | SimulatorEnv (gmx) |
| AbstractOptionSectionHandle (gmx) | DiagonalMasker (gmx) | NbnxmPairlistCpuWork::IClusterData (gmx) | NotImplementedError (gmx) | SimulatorStateData (gmx) |
| AbstractPlotModule (gmx) | DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeEqualsISize > (gmx) | ICommandLineModule (gmx) |
| MpiComm::SingleRank (gmx) |
| AnalysisArrayData (gmx) | DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsDoubleISize > (gmx) | ICommandLineOptionsModule (gmx) | StaticLog2 (gmx) |
| AnalysisData (gmx) | DiagonalMasker< nR, kernelLayout, KernelLayoutClusterRatio::JSizeIsHalfISize > (gmx) | ICommandLineOptionsModuleSettings (gmx) | OptionInfo (gmx) | StaticLog2< 0 > (gmx) |
| AnalysisDataAverageModule (gmx) | DomainCommBackward (gmx) | IdentityFormatter (gmx) | Options (gmx) | StaticLog2< 1 > (gmx) |
| AnalysisDataBinAverageModule (gmx) | DomainCommForward (gmx) | AtomPairlist::IEntry (gmx) | OptionSection (gmx) | StringFormatter (gmx) |
| AnalysisDataDisplacementModule (gmx) | DomainPairComm (gmx) | IFmmOptions (gmx) | OptionSectionHandle (gmx) | StringOption (gmx) |
| AnalysisDataFrameAverageModule (gmx) | DoubleOption (gmx) | IFrameConverter (gmx) | OptionTemplate (gmx) | StringOptionInfo (gmx) |
| AnalysisDataFrameHeader (gmx) | DoubleOptionInfo (gmx) | IListIterator | OutputRequirementOptionDirector (gmx) | StringTable |
| AnalysisDataFrameRef (gmx) |
| IListProxy | OutputRequirements (gmx) | StringTableEntry |
| AnalysisDataHandle (gmx) | IListRange | OutputSelector (gmx) | StringToEnumValueConverter (gmx) |
| AnalysisDataLifetimeModule (gmx) | ElementNotFoundError (gmx) | InconsistentInputError (gmx) |
| SystemMomenta |
| AnalysisDataModuleParallel (gmx) | EnergyAccumulator (gmx) | IndexGroup | SystemMomentum |
| AnalysisDataModuleSerial (gmx) | EnergyAccumulator< false, true > (gmx) | INNPotModel (gmx) | PackedJClusterList (gmx) |
|
| AnalysisDataPlotModule (gmx) | EnergyAccumulator< true, true > (gmx) | InstallationPrefixInfo (gmx) | PaddedVector (gmx) |
| AnalysisDataPlotSettings (gmx) | EnergyAccumulator< useEnergyGroups, false > (gmx) | Int64Option (gmx) | PairlistSets (gmx) | t_filenm |
| AnalysisDataPointSetRef (gmx) | EnergyFunctionProperties (gmx) | Int64OptionInfo (gmx) | PairSearch (gmx) | t_idef |
| AnalysisDataSimpleHistogramModule (gmx) | EnergyGroupsPerCluster (gmx) | IntegerOption (gmx) | PairsearchWork (gmx) | t_ilist |
| AnalysisDataValue (gmx) | EnumClassSuitsEnumerationArray (gmx) | IntegerOptionInfo (gmx) | ParallelConsistencyError (gmx) | t_interaction_function |
| AnalysisDataVectorPlotModule (gmx) | EnumOption (gmx) | InteractionDefinitions | UniformRealDistribution::param_type (gmx) | t_iparams |
| AnalysisDataWeightedHistogramModule (gmx) | EnumOptionInfo (gmx) | InteractionList | UniformIntDistribution::param_type (gmx) | t_mapping |
| AnalysisHistogramSettings (gmx) | EqualCaseInsensitive (gmx) | InteractionListHandle | TabulatedNormalDistribution::param_type (gmx) | t_matrix |
| AnalysisHistogramSettingsInitializer (gmx) | ExceptionInfo (gmx) | InteractiveMD (gmx) | NormalDistribution::param_type (gmx) | t_mdatoms |
| AnalysisNeighborhood (gmx) | ExceptionInitializer (gmx) | InternalError (gmx) | GammaDistribution::param_type (gmx) | t_oriresdata |
| AnalysisNeighborhoodPair (gmx) | ExponentialDistribution (gmx) | InvalidInputError (gmx) | ExponentialDistribution::param_type (gmx) | t_pargs |
| AnalysisNeighborhoodPairSearch (gmx) |
| IonSwapping (gmx) | PartialDeserializedTprFile | t_pbc |
| AnalysisNeighborhoodPositions (gmx) | IOptionManager (gmx) | PbcAiuc | t_state |
| AnalysisNeighborhoodSearch (gmx) | FEPStateValue | IOptionsBehavior (gmx) | PdbAtomEntry | t_xpmelmt |
| APIError (gmx) | FileIOError (gmx) | IOptionsContainer (gmx) | PlanSetupData (gmx) | TabulatedNormalDistribution (gmx) |
| ArrayRef (gmx) | FileNameOption (gmx) | IOptionsContainerWithSections (gmx) | PmeSolve | TestSystem (gmx::test) |
| ArrayRefWithPadding (gmx) | FileNameOptionInfo (gmx) | IOutputAdapter (gmx) | PosixMemstream (gmx::test) | TextLineWrapper (gmx) |
| AtomIterator | FileNameOptionManager (gmx) | IProgramContext (gmx) | PotentialPointData (gmx) | TextLineWrapperSettings (gmx) |
| AtomPair (gmx) | FixedCapacityVector (gmx) | IRestraintPotential (gmx) | ProcessFrameConversion (gmx) | ThreeFry2x64 (gmx) |
| AtomPairlist (gmx) | FlagsTemplate (gmx) | IsSerializableEnum (gmx) | Profiling (gmx) | ThreeFry2x64Fast (gmx) |
| AtomProperties | FloatOption (gmx) | Range::iterator (gmx) | PullCoordExpressionParser (gmx) | ThreeFry2x64General (gmx) |
| AtomProxy | FloatOptionInfo (gmx) | ITopologyProvider (gmx) |
| TimeUnitBehavior (gmx) |
| AtomRange | FmmMdpOptions (gmx) |
| TimeUnitManager (gmx) |
| AtomsAdjacencyListElement | FmmMdpValidator (gmx) | Range (gmx) | ToleranceError (gmx) |
|
| ForceHelperBuffers | JClusterList (gmx) | RangeError (gmx) | TopologyData (gmx) |
| ForeignLambdaTerms | AtomPairlist::JEntry (gmx) | RangePartitioning (gmx) | TorchModel (gmx) |
| BalanceRegion |
|
| RepeatingOptionSection (gmx) | TrajectoryAnalysisCommandLineRunner (gmx) |
| BasicMatrix3x3 (gmx) | RepeatingOptionSectionHandle (gmx) | TrajectoryAnalysisModule (gmx) |
| BasicVector (gmx) | GammaDistribution (gmx) | LegacyEnumOption (gmx) | RocfftInitializer (gmx) | TrajectoryAnalysisModuleData (gmx) |
| BenchmarkSystem (gmx) | gmx_ana_index_t | LegacyInput (gmx) | RocfftPlan (gmx) | TrajectoryAnalysisSettings (gmx) |
| BooleanOption (gmx) | gmx_ana_indexmap_t | LennardJonesCalculator (gmx) |
| TrajectoryFileOpener (gmx) |
| BooleanOptionInfo (gmx) | gmx_ana_pos_t | LennardJonesCalculator< calculateEnergies, InteractionModifiers::ForceSwitch > (gmx) | TrajectoryFrameWriter (gmx) |
| BoolType (gmx) | gmx_cache_protect_t (gmx) | LennardJonesCalculator< calculateEnergies, InteractionModifiers::PotSwitch > (gmx) | ScopedIndenter (gmx) |
|
| BoxDeformationHandle (gmx) | gmx_cmap_t | LennardJonesCalculator< false, InteractionModifiers::PotShift > (gmx) | Selection (gmx) |
|
| gmx_cmapdata_t | LennardJonesCalculator< true, InteractionModifiers::PotShift > (gmx) | SelectionCollection (gmx) | UniformIntDistribution (gmx) |
| gmx_domdec_constraints_t | ListOfLists (gmx) | SelectionOption (gmx) | UniformRealDistribution (gmx) |
| CheckpointData (gmx) | gmx_enerdata_t | LocalSettleData | SelectionOptionBehavior (gmx) | UnsignedInt64Option (gmx) |
| CheckpointError (gmx) | gmx_ffparams_t |
| SelectionOptionInfo (gmx) | UnsignedInt64OptionInfo (gmx) |
| CheckpointHeaderContents | gmx_localtop_t | SelectionOptionManager (gmx) | UnsignedIntegerOption (gmx) |
| DomainCommBackward::ColumnInfo (gmx) | gmx_molblock_t | MembedHolder (gmx) | SelectionPosition (gmx) | UnsignedIntegerOptionInfo (gmx) |
| CommandLineHelpWriter (gmx) | gmx_moltype_t | MissingElementConnectionError (gmx) | SelectionTopologyProperties (gmx) | UserInputError (gmx) |
| CommandLineModuleSettings (gmx) | gmx_sparsematrix | ModularSimulatorError (gmx) | SetAtoms (gmx) |
|
| CommandLineParser (gmx) | GpuHaloExchangeNvshmemHelper (gmx) | MoleculeBlockIndices | SetBox (gmx) |
| CompileTimeStringJoin (gmx) | GridDimensions (gmx) | MtsLevel (gmx) | SetForces (gmx) | interaction_const_t::VanDerWaalsSettings |
| ConstraintsParam (gmx) | GromacsException (gmx) |
| SetPrecision (gmx) | VsiteTypeAndSign |
| ConvertTprInfo (gmx) | GromppMtsOpts (gmx) | SetStartTime (gmx) |
|
| CoulombCalculator (gmx) |
| NbnxmKernel (gmx) | SetTimeStep (gmx) |
| CoulombCalculator< KernelCoulombType::EwaldAnalytical > (gmx) | NbnxmPairlistCpuWork (gmx) | SettleWaterTopology | wallcc_t |
| CoulombCalculator< KernelCoulombType::EwaldTabulated > (gmx) | H5md (gmx) | nbnxn_cj_packed_t (gmx) | SetVelocities (gmx) | WarningHandler |
| CoulombCalculator< KernelCoulombType::RF > (gmx) | H5mdCloser (gmx) | nbnxn_cj_t (gmx) | SimulationAlgorithmSetupError (gmx) | WaterMolecule |
| interaction_const_t::CoulombSettings | H5mdDataSetBuilder (gmx) | nbnxn_cycle_t (gmx) | SimulationGroups | |
| | | | |
1.8.5
